HiFi / ONT genome asssembly pipeline with WDL in ECCB 2022

Last year in 2022, I helped to present the demo for HiFI / ONT (Oxford Nanopore Technology) genome assembly sequencing pipeline on WDL (Workflow Definition Language) in the event ECCB (European Conference on Computing Biology) 2022.

It seems that the recording is available. (the workshop page) So, I updated my past article adding this link.

I would appreciate this opportunity and the people who helped me.

www.youtube.com

So far, I experienced genome analysis pipelines below.

• Pipeline with the containers with some Dockerfile files.
• Pipeline with the Nextflow and nf-core.
• Pipeline with the Chris project. I developed the pipeline platform rather than a pipeline. This is not about a genome analysis pipeline.
• Pipeline with WDL (Workflow Definition Language)

Now I feel I want to zoom out the biology and explore something else in biology.