Install Fedora 32
Note to install Fedora 32 to a laptop.
I like the way to install it from the USB bootable media.
Go to https://getfedora.org/en/, then check the way https://getfedora.org/en/workstation/download/.
Create the USB media
Referr this web site.
I used 4 GB USB memory. Inserted it. Then
$ sudo dnf install mediawriter $ sudo mediawriter
Then when writing the data, the media is create.
Install
Insert the USB media, and boot it.
Create partition. Remove existing partitions in the new laptop. Then
- /boot: 500 MB
- /: Remaining disk size except other partitions
- Swap: As my laptop memory is 16 GB, I used 8 GB for swap, seeing this web site. I encrypted with LUKS2. See this web site.
Install Miniconda3 on Fedora
Install Miniconda referring the Miniconda and Installing in silient mode.
Install
/home/root/local/miniconda3-py38-4.8.3
is installed directory in my case.
$ wget https://repo.anaconda.com/miniconda/Miniconda3-py38_4.8.3-Linux-x86_64.sh $ sudo mkdir /home/root/local/miniconda3-py38-4.8.3 $ sudo chown jaruga:jaruga /home/root/local/miniconda3-py38-4.8.3
The installer script's options are like this. As I created the installing directory above, -u
option is needed.
-b
: batch mote.-u
: update-p
: prefix
$ bash Miniconda3-py38_4.8.3-Linux-x86_64.sh -b -u -p /home/root/local/miniconda3-py38-4.8.3 ... installation finished.
The following is the log to enable conda
on the shell section like virtualenv
, to enable conda setting as init. But as I do not want to modify .bashrc
for that, I recommend NOT to run the following step. It's just for my note.
$ eval "$(/home/root/local/miniconda3-py38-4.8.3/bin/conda shell.bash hook)" (base) $ command -v conda conda (base) $ conda init modified /home/jaruga/.bashrc (base) $ conda config --set auto_activate_base false
Then add conda
's bin directory to PATH
with lower priority after the standard bin directories like this. Because I just want to use conda
command, using specific python
command set.
$ vi ~/.bashrc ... PATH="${PATH}:/home/root/local/miniconda3-py38-4.8.3/bin" ... export PATH $ source ~/.bashrc
$ which conda /home/root/local/miniconda3-py38-4.8.3/bin/conda $ which python3 /usr/bin/python3 $ which python /usr/bin/python
conda
command
It's like this.
$ conda install -c bioconda -y mafft $ conda install -c genomedk -y raxml-ng
$ conda list # packages in environment at /home/root/local/miniconda3-py38-4.8.3: # # Name Version Build Channel ... mafft 7.467 h516909a_0 bioconda ... raxml-ng 0.6.0 0 genomedk ... $ command -v mafft /home/root/local/miniconda3-py38-4.8.3/bin/mafft $ command -v raxml-ng /home/root/local/miniconda3-py38-4.8.3/bin/raxml-ng