Install Miniconda referring the Miniconda and Installing in silient mode.
Install
/home/root/local/miniconda3-py38-4.8.3 is installed directory in my case.
$ wget https://repo.anaconda.com/miniconda/Miniconda3-py38_4.8.3-Linux-x86_64.sh $ sudo mkdir /home/root/local/miniconda3-py38-4.8.3 $ sudo chown jaruga:jaruga /home/root/local/miniconda3-py38-4.8.3
The installer script's options are like this. As I created the installing directory above, -u option is needed.
-b: batch mote.-u: update-p: prefix
$ bash Miniconda3-py38_4.8.3-Linux-x86_64.sh -b -u -p /home/root/local/miniconda3-py38-4.8.3 ... installation finished.
The following is the log to enable conda on the shell section like virtualenv, to enable conda setting as init. But as I do not want to modify .bashrc for that, I recommend NOT to run the following step. It's just for my note.
$ eval "$(/home/root/local/miniconda3-py38-4.8.3/bin/conda shell.bash hook)" (base) $ command -v conda conda (base) $ conda init modified /home/jaruga/.bashrc (base) $ conda config --set auto_activate_base false
Then add conda's bin directory to PATH with lower priority after the standard bin directories like this. Because I just want to use conda command, using specific python command set.
$ vi ~/.bashrc
...
PATH="${PATH}:/home/root/local/miniconda3-py38-4.8.3/bin"
...
export PATH
$ source ~/.bashrc
$ which conda /home/root/local/miniconda3-py38-4.8.3/bin/conda $ which python3 /usr/bin/python3 $ which python /usr/bin/python
conda command
It's like this.
$ conda install -c bioconda -y mafft $ conda install -c genomedk -y raxml-ng
$ conda list # packages in environment at /home/root/local/miniconda3-py38-4.8.3: # # Name Version Build Channel ... mafft 7.467 h516909a_0 bioconda ... raxml-ng 0.6.0 0 genomedk ... $ command -v mafft /home/root/local/miniconda3-py38-4.8.3/bin/mafft $ command -v raxml-ng /home/root/local/miniconda3-py38-4.8.3/bin/raxml-ng
