Another Japan in the World

Jun Aruga's blog.

Basel Switzerland facing Germany and France

Basel is interesting city. The city is facing along the border of Germany and France. The area is around the border is very interesting. I can imagine people life is unique. We can easily reach to outside of the border of Switzerland by Ba…

Basel, Switzerland

Basel main station Basel exhibition centre. Huge.

Davos, Switzerland

As I had interest for Yuval Harari's talk at Davos World Ecnomic Forum 2018, I visited the place in Davos. Anyone can join the event for free. https://www.weforum.org/open-forum/pages/faq The Open Forum is accessible to everybody. If you a…

Zurich, Switzerland

Zurich Airport. It looks like shopping mall or train station building. It takes only 12 minutes from Zurich airport to Zurich main station by train. Market in Zurich main station. Zurich main station Yuval Harari's books are popular in Zur…

Developments in NGS

X axis: Read length => Read length for each reads Y axis: Gigabses per run => Total read bases per run (unit: Giga) Detail is [1] [1] Detail: Developments in high throughput sequencing – July 2016 edition | In between lines of code

The World first portable genome sequencing device MinION supporting Linux

This is not new information. I just found it today. Oxford Nanopore mobile portable genome sequencer MinION is supporting not only Windows and Mac but also Ubuntu Linux partly! [1][2] MinION Video: https://vimeo.com/211467532 I want it and…

The World Economic Forum at Davos

Recently I was reading a book of Jennifer Doudna who is a RNA biologist and discovered how to edit gene with Crisper Cas9, the revolutional way for genome editing. [1] The book I am reading is the Japanese translation edition. It is a quit…

Install RPM 4.8.0 on CentOS6

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I investigated how default running RPM v4.8.0 [1] is built and installed on CentOS6, because my application [1] needs to support CentOS6. Very old version RPM v4.8.0 is running as a default on CentOS6. We can use CentOS6 environment, downl…

The most cited genes

This person is ... [1] A software engineer with some training in bioinformatics, he was pursuing a PhD and thought it would really help to know some fundamentals of biology. "A software engineer with some training in bioinformatics" is lik…

Canary Islands

The islands have 7 islands mainly. This time the route I visited is Gran Canaria -> Tenerife -> Gran Canaria Tenerife: Largest island in Canary island. Santa Cruz on north east is a center of the island. Gran Canaria: 2nd largest island. I…

2017年の振り返り

近況 2018年、あけましておめでとうございます。 今回は、年末年始の恒例行事として、日本語で、これを読まれているどなたかのために記事を書きたいと思います。 昨年の年末から今まで、半分は、締め切りが迫っていた仕事、もう半分は、自分で決めたタスクに…

Understanding Longevity Industry

To understand it, longevity.international: http://longevity.international/ The reports are good. Juvenescence: Investing in the age of longevity: https://www.amazon.co.jp/dp/B075WXX93Q Just started reading, the book and the structure of co…

Air Berlin and Niki filed for bankruptcy

The LCC airline companies was bankruptcy. Niki https://www.flyniki.com/en/start.php The flight operations of NIKI Luftfahrt GmbH under the IATA airline code HG were suspended on Thursday, 14th December 2017. Air Berlin https://www.airberli…

Sending pull-request to Mercurial repository

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A way to send pull-request to Git repository is deeply in my mind and body. In case of git repo. I would show this as a comparison of Marcurial repo. $ git clone <repo url> $ git remote add junaruga <forked repo url> $ git checkout -b feature/foo $ vi something $ gi</forked></repo>…

Anaconda and Jupyter

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When talking with researchers, they like using Anaconda to install Python and other Python packages to build Python environment. Anaconda is a collection or all in one for Python and other Data Science (Analysis) packages. People do not ha…

Install MongoDB 3.4.3 on Fedora 26

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Use the RPM packages. In case of Fedora MongoDB RPM Package, mongodb RPM includes the client commands "mongo". mongodb-server RPM includes the server files and the commands such as "mongod" and "mongos". Install Install is easy. Just type …

Visualization is a key for learning

I realized it recently. I am saving my memory's main structure as an image. It is something like the Tree trunk: saving as an image or sense. Small branches and leaves: saving as an text. To get information from my brain. Maybe I am access…

A picture of Machine Intelligence companies

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It's fun. The Current State of Machine Intelligence 3.0 www.shivonzilis.com

To avoid the trap of thinking you have something to lose

We are in many choices every day. How to make a choice? The hint is in a Steve Job's famous speech in Stanford University. news.stanford.edu “If today were the last day of my life, would I want to do what I am about to do today?” ... Remem…

Barcelona Live Update on EL PAIS

Lovely City Barcelona. The Live update is here. Catalan parliament approves resolution to declare independence elpais.com And other memo list. Beyond Catalonia: pro-independence movements in Europe www.theguardian.com

シークエンサー

日本語で書きます。 理由は、日本語のゲノムの資料を今日読んで、「なんだ、そういうことだったのか」ということがあったからです。 残念なことに、まだまだ日本語の文章を読んだ方が格段に理解ができる、ということがわかりました。 国際ヒトゲノム参照配列…

English pronunciation and the used mascle

I am not good at speaking with good pronunciation. But recently I checked each pronunciation of mine. And I found that especially the physical motion opening a mouse widely with side was my challenging. According to International Phonetic …

Talk: Yuval Harari

Historian Yuval Harari’s Talk. Very interesting. Also how to speak, and the used words. How to make a sentence. How to express a dense content by short words in short time. Those are so helpful for me. www.ted.com And his book is also writ…

Wateched The Linguistic Genius of Babies

Today what I learned from below video in English lesson is I understood why my listening to English is so hard to me :) Taking the statistics of sounds from English and Japanese language, Japanese language does not have sounds like English…

Brown Rice in Brno Finally..

I found the shop and e-shop to buy brown rice in Brno. Maybe we can buy it stably! “RÝŽE KULATOZRNNÁ NATURAL”. This word is a key to to find the brown rice in Czech. BRNĚNKA Address: Purkyňova 35d, 612 00 Brno-Královo Pole In front of tram…

Appearance and Personality

That may be surprising people. Living in Czech, my problem is that it’s still hard for me to distinguish most local people from appearance. For detail, I might be able to do it. But I am not confident for that. Of course each people has a …

Amazon and Genomics

Google Genomics, Microsoft Genomics, And now Amazon Web Services with Genomics. Partnership with DNAnexus, Illumina, and Seven Bridges. Getting to Know APN Genomics Partners BioTeam, DNAnexus, Illumina, and Seven Bridges | AWS Partner Netw…

Install Docker on Mac 10.9

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I installed Docker on my Mac. The situation is the latest Docker does not support my old Mac. But by installing Docker toolbox including Docker, I could use Docker on Mac. To install the toolbox, see this page. https://store.docker.com/edi…

GWAS Catalog webinar

It is really a cool video and etc. The NHGRI-EBI GWAS Catalog, a curated resource of SNP-trait associations | EMBL-EBI Train online

Love Avinguda Diagonal (Diagonal street) in Barcelona

Avinguda Diagonal (Diagonal street). This street may be the most favorite area so far. Why? I can relax because of a few people, a big space, many cafe with enough space, nice fitness gym with pool, healthy cafe and market, shopping malls,…